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SAMN38049519
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
24,766
Reads
798
Observed features
6.237
Shannon
0.933
Evenness
798
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596443
Per-run QC
- 16S identity
- 96.5%
- Q30
- 87.4%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 85.4%
- Archaea 14.6%
- Actinomycetota 18.4%
- Pseudomonadota 16.3%
- Thermoproteota 14.6%
- Acidobacteriota 11.0%
- Planctomycetota 8.1%
- Bacteroidota 6.7%
- Bacillota 6.4%
- everything else 18.6%
- Nitrososphaeria 14.6%
- Actinobacteria 9.5%
- Alphaproteobacteria 9.3%
- Planctomycetes 7.3%
- Gammaproteobacteria 7.0%
- Bacteroidia 6.7%
- Thermoleophilia 6.4%
- everything else 39.2%
- Nitrososphaerales 14.6%
- Incertae Sedis 7.9%
- Vicinamibacterales 6.0%
- Bacillales 4.3%
- Hyphomicrobiales 4.3%
- Pirellulales 4.2%
- Gaiellales 4.0%
- everything else 54.7%
- Incertae Sedis 20.8%
- Nitrososphaeraceae 14.6%
- Pirellulaceae 4.2%
- Chitinophagaceae 3.8%
- Bacillaceae 3.6%
- Sphingomonadaceae 3.3%
- Chthoniobacteraceae 2.2%
- everything else 47.6%
- Incertae Sedis 51.6%
- Sphingomonas 2.9%
- Candidatus Nitrososphaera 2.8%
- Pirellula 2.2%
- Chthoniobacter 1.9%
- Nocardioides 1.8%
- Pseudarthrobacter 1.5%
- everything else 35.2%
- uncultured bacterium 53.1%
- uncultured archaeon 11.4%
- uncultured Acidobacteria bacterium 3.3%
- uncultured crenarchaeote 3.2%
- metagenome 1.8%
- uncultured soil bacterium 1.7%
- Pseudarthrobacter polychromogenes 1.5%
- everything else 24.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 90% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.