opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38049512
Wieselburg_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
25,201
Reads
834
Observed features
6.383
Shannon
0.949
Evenness
834
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596450
Per-run QC
- 16S identity
- 87.2%
- Q30
- 87.9%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.5%
- Archaea 4.5%
- Pseudomonadota 20.5%
- Actinomycetota 15.8%
- Acidobacteriota 11.5%
- Verrucomicrobiota 8.1%
- Cyanobacteriota 7.9%
- Bacillota 7.0%
- Planctomycetota 6.9%
- everything else 22.4%
- Alphaproteobacteria 11.6%
- Actinobacteria 9.2%
- Gammaproteobacteria 8.9%
- Verrucomicrobiia 8.1%
- Cyanobacteriia 7.8%
- Acidobacteriae 6.4%
- Planctomycetes 6.1%
- everything else 42.0%
- Chloroplast 6.7%
- Burkholderiales 6.5%
- Chthoniobacterales 6.1%
- Hyphomicrobiales 5.7%
- Incertae Sedis 4.7%
- Nitrososphaerales 4.5%
- Sphingomonadales 4.1%
- everything else 61.8%
- Incertae Sedis 21.8%
- Chthoniobacteraceae 5.7%
- Nitrososphaeraceae 4.5%
- Sphingomonadaceae 4.1%
- Bacillaceae 3.2%
- Chitinophagaceae 2.9%
- Xanthobacteraceae 2.8%
- everything else 55.0%
- Incertae Sedis 43.3%
- Candidatus Udaeobacter 4.8%
- Sphingomonas 4.1%
- Nocardioides 2.3%
- Paenibacillus 2.1%
- Candidatus Solibacter 1.6%
- Massilia 1.5%
- everything else 40.3%
- uncultured bacterium 60.1%
- uncultured archaeon 4.2%
- metagenome 3.6%
- uncultured Acidobacteria bacterium 2.8%
- uncultured eukaryote 2.0%
- Pseudarthrobacter polychromogenes 1.2%
- Bacillus sp. (in: Bacteria) 1.1%
- everything else 25.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.