opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38049517
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
17,556
Reads
640
Observed features
6.133
Shannon
0.949
Evenness
640
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596445
Per-run QC
- 16S identity
- 77.9%
- Q30
- 88.3%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.0%
- Archaea 6.0%
- Pseudomonadota 19.6%
- Actinomycetota 15.0%
- Acidobacteriota 13.4%
- Verrucomicrobiota 9.0%
- Planctomycetota 7.8%
- Bacillota 7.2%
- Thermoproteota 6.0%
- everything else 21.9%
- Alphaproteobacteria 11.9%
- Verrucomicrobiia 9.0%
- Actinobacteria 9.0%
- Gammaproteobacteria 7.7%
- Acidobacteriae 7.0%
- Planctomycetes 7.0%
- Nitrososphaeria 6.0%
- everything else 42.3%
- Chthoniobacterales 6.9%
- Hyphomicrobiales 6.7%
- Nitrososphaerales 6.0%
- Burkholderiales 5.6%
- Chloroplast 5.0%
- Incertae Sedis 4.3%
- Chitinophagales 3.8%
- everything else 61.8%
- Incertae Sedis 19.8%
- Chthoniobacteraceae 6.5%
- Nitrososphaeraceae 6.0%
- Sphingomonadaceae 3.7%
- Chitinophagaceae 3.6%
- Bacillaceae 3.2%
- Xanthobacteraceae 3.2%
- everything else 53.8%
- Incertae Sedis 45.3%
- Candidatus Udaeobacter 5.5%
- Sphingomonas 3.7%
- Paenibacillus 2.3%
- Candidatus Solibacter 2.2%
- Mycobacterium 2.1%
- Nocardioides 2.1%
- everything else 36.8%
- uncultured bacterium 59.2%
- uncultured archaeon 4.4%
- uncultured Acidobacteria bacterium 3.3%
- metagenome 3.0%
- uncultured eukaryote 2.0%
- uncultured Verrucomicrobia bacterium 1.4%
- Bacillus sp. (in: Bacteria) 1.3%
- everything else 25.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.