opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38049516
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
24,791
Reads
828
Observed features
6.38
Shannon
0.949
Evenness
828
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596446
Per-run QC
- 16S identity
- 84.4%
- Q30
- 88.0%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.2%
- Archaea 4.9%
- Pseudomonadota 21.1%
- Actinomycetota 15.3%
- Acidobacteriota 13.3%
- Verrucomicrobiota 9.7%
- Planctomycetota 7.3%
- Bacillota 6.7%
- Bacteroidota 6.1%
- everything else 20.4%
- Alphaproteobacteria 12.8%
- Verrucomicrobiia 9.7%
- Actinobacteria 9.3%
- Gammaproteobacteria 8.4%
- Planctomycetes 6.6%
- Bacteroidia 6.1%
- Acidobacteriae 5.9%
- everything else 41.2%
- Hyphomicrobiales 7.2%
- Chthoniobacterales 7.2%
- Burkholderiales 5.9%
- Incertae Sedis 5.7%
- Nitrososphaerales 4.9%
- Chloroplast 3.8%
- Bacillales 3.7%
- everything else 61.6%
- Incertae Sedis 19.8%
- Chthoniobacteraceae 6.8%
- Nitrososphaeraceae 4.9%
- Bacillaceae 3.7%
- Sphingomonadaceae 3.7%
- Chitinophagaceae 3.5%
- Xanthobacteraceae 3.5%
- everything else 54.1%
- Incertae Sedis 44.1%
- Candidatus Udaeobacter 5.3%
- Sphingomonas 3.5%
- Nocardioides 1.9%
- Mycobacterium 1.9%
- Paenibacillus 1.8%
- Massilia 1.6%
- everything else 39.9%
- uncultured bacterium 59.7%
- uncultured archaeon 4.2%
- uncultured Acidobacteria bacterium 3.7%
- metagenome 3.7%
- uncultured Verrucomicrobia bacterium 1.4%
- Bacillus sp. (in: Bacteria) 1.3%
- uncultured eukaryote 1.1%
- everything else 25.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.