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SAMN38049525
Marchfeld_HighP_Residues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
28,104
Reads
927
Observed features
6.46
Shannon
0.946
Evenness
927
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596452
Per-run QC
- 16S identity
- 94.8%
- Q30
- 87.2%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 94.8%
- Archaea 5.1%
- Pseudomonadota 19.4%
- Actinomycetota 14.0%
- Acidobacteriota 13.1%
- Verrucomicrobiota 9.8%
- Planctomycetota 8.1%
- Bacillota 7.4%
- Bacteroidota 6.6%
- everything else 21.4%
- Alphaproteobacteria 11.7%
- Verrucomicrobiia 9.8%
- Actinobacteria 8.3%
- Gammaproteobacteria 7.8%
- Planctomycetes 7.3%
- Bacteroidia 6.6%
- Acidobacteriae 6.3%
- everything else 42.2%
- Chthoniobacterales 7.1%
- Hyphomicrobiales 6.5%
- Burkholderiales 5.6%
- Nitrososphaerales 5.1%
- Incertae Sedis 4.5%
- Chloroplast 4.4%
- Chitinophagales 4.0%
- everything else 62.9%
- Incertae Sedis 18.8%
- Chthoniobacteraceae 6.7%
- Nitrososphaeraceae 5.1%
- Chitinophagaceae 4.0%
- Sphingomonadaceae 3.6%
- Bacillaceae 3.5%
- Xanthobacteraceae 3.3%
- everything else 55.0%
- Incertae Sedis 43.4%
- Candidatus Udaeobacter 5.3%
- Sphingomonas 3.5%
- Paenibacillus 2.1%
- Nocardioides 2.0%
- Candidatus Solibacter 1.7%
- Mycobacterium 1.6%
- everything else 40.4%
- uncultured bacterium 60.2%
- uncultured archaeon 4.4%
- metagenome 3.3%
- uncultured Acidobacteria bacterium 3.2%
- Bacillus sp. (in: Bacteria) 1.4%
- uncultured Verrucomicrobia bacterium 1.4%
- uncultured eukaryote 1.1%
- everything else 24.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.