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SAMN38049526
ExtractionControl
- 0 run(s)
- trimmed
- not applicable
- 2021
derived from this sample's metadata and per-run QC
35,368
Reads
1,020
Observed features
6.536
Shannon
0.944
Evenness
1,020
Chao1
Where and when
- Collected
- 2021-10
- Depth
- not applicable
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- not recorded
Runs
none recorded
Per-run QC
- 16S identity
- 89.6%
- Q30
- 80.9%
- Region
- n/a
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 4.5%
Most abundant features
- ASV_7815 · Incertae Sedis 25 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 93.3%
- Archaea 6.7%
- Pseudomonadota 18.7%
- Acidobacteriota 13.7%
- Actinomycetota 13.2%
- Verrucomicrobiota 8.9%
- Bacillota 8.0%
- Cyanobacteriota 7.6%
- Planctomycetota 7.3%
- everything else 22.5%
- Alphaproteobacteria 10.4%
- Verrucomicrobiia 8.9%
- Gammaproteobacteria 8.3%
- Actinobacteria 7.7%
- Cyanobacteriia 7.5%
- Bacilli 7.0%
- Planctomycetes 6.7%
- everything else 43.5%
- Chloroplast 7.3%
- Nitrososphaerales 6.6%
- Chthoniobacterales 6.5%
- Burkholderiales 6.0%
- Hyphomicrobiales 5.4%
- Incertae Sedis 4.7%
- Chitinophagales 4.4%
- everything else 59.0%
- Incertae Sedis 22.3%
- Nitrososphaeraceae 6.6%
- Chthoniobacteraceae 5.9%
- Chitinophagaceae 4.3%
- Bacillaceae 4.2%
- Sphingomonadaceae 3.7%
- Oxalobacteraceae 2.6%
- everything else 50.3%
- Incertae Sedis 47.9%
- Candidatus Udaeobacter 4.8%
- Sphingomonas 3.6%
- Nocardioides 2.2%
- Paenibacillus 2.2%
- Massilia 2.2%
- Candidatus Solibacter 1.8%
- everything else 35.3%
- uncultured bacterium 58.7%
- uncultured archaeon 5.0%
- metagenome 3.7%
- uncultured Acidobacteria bacterium 3.5%
- uncultured eukaryote 2.4%
- Bacillus sp. (in: Bacteria) 1.3%
- uncultured crenarchaeote 0.9%
- everything else 24.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 95% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 93% similar (genus)
- same collection date
- shared: 2021, trimmed
- composition 93% similar (genus)
- same collection date
- shared: 2021, trimmed
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.