opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN38049514
Wieselburg_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
29,645
Reads
975
Observed features
6.52
Shannon
0.947
Evenness
975
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596448
Per-run QC
- 16S identity
- 91.8%
- Q30
- 88.3%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.3%
- Archaea 4.7%
- Pseudomonadota 20.3%
- Actinomycetota 16.5%
- Acidobacteriota 11.6%
- Verrucomicrobiota 8.8%
- Bacillota 7.1%
- Planctomycetota 7.0%
- Bacteroidota 6.0%
- everything else 22.6%
- Alphaproteobacteria 12.1%
- Actinobacteria 9.9%
- Verrucomicrobiia 8.8%
- Gammaproteobacteria 8.3%
- Planctomycetes 6.2%
- Bacteroidia 6.0%
- Acidobacteriae 5.7%
- everything else 43.2%
- Chthoniobacterales 6.7%
- Burkholderiales 5.9%
- Hyphomicrobiales 5.8%
- Incertae Sedis 4.7%
- Nitrososphaerales 4.7%
- Chloroplast 4.4%
- Sphingomonadales 4.3%
- everything else 63.4%
- Incertae Sedis 19.9%
- Chthoniobacteraceae 6.3%
- Nitrososphaeraceae 4.7%
- Sphingomonadaceae 4.3%
- Chitinophagaceae 3.5%
- Bacillaceae 3.3%
- Xanthobacteraceae 2.9%
- everything else 55.1%
- Incertae Sedis 42.3%
- Candidatus Udaeobacter 4.9%
- Sphingomonas 4.2%
- Nocardioides 2.5%
- Mycobacterium 1.8%
- Paenibacillus 1.7%
- Chthoniobacter 1.4%
- everything else 41.2%
- uncultured bacterium 60.0%
- uncultured archaeon 4.0%
- metagenome 3.3%
- uncultured Acidobacteria bacterium 2.6%
- uncultured eukaryote 1.4%
- Bacillus sp. (in: Bacteria) 1.3%
- uncultured Verrucomicrobia bacterium 1.2%
- everything else 26.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 93% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 91% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.