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SAMN38049520
Marchfeld_HighP_NoResidues
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0.1 m
- 2021
derived from this sample's metadata and per-run QC
19,036
Reads
632
Observed features
6.012
Shannon
0.932
Evenness
632
Chao1
Where and when
- Collected
- 2021-10
- Depth
- 0.1 m
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 48.21589, 16.61836
- Platforms
- Illumina MiSeq
Runs
SRR26596457
Per-run QC
- 16S identity
- 96.8%
- Q30
- 87.8%
- Region
- V4
- Read length
- 254 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Incertae Sedis 378 (2.0%)
- ASV_4482 · Incertae Sedis 308 (1.6%)
- ASV_5593 · Incertae Sedis 301 (1.6%)
- ASV_6704 · Incertae Sedis 289 (1.5%)
- ASV_7815 · Incertae Sedis 183 (1.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 83.3%
- Archaea 16.7%
- Actinomycetota 18.9%
- Thermoproteota 16.7%
- Pseudomonadota 14.6%
- Acidobacteriota 10.6%
- Bacillota 8.7%
- Planctomycetota 7.4%
- Bacteroidota 6.0%
- everything else 17.0%
- Nitrososphaeria 16.7%
- Actinobacteria 9.0%
- Bacilli 8.5%
- Alphaproteobacteria 8.2%
- Thermoleophilia 7.0%
- Planctomycetes 6.6%
- Gammaproteobacteria 6.4%
- everything else 37.6%
- Nitrososphaerales 16.7%
- Incertae Sedis 7.7%
- Bacillales 6.0%
- Vicinamibacterales 5.8%
- Gaiellales 4.5%
- Pirellulales 4.2%
- Hyphomicrobiales 3.9%
- everything else 51.1%
- Incertae Sedis 19.9%
- Nitrososphaeraceae 16.7%
- Bacillaceae 5.1%
- Pirellulaceae 4.2%
- Chitinophagaceae 3.4%
- Sphingomonadaceae 2.8%
- Chthoniobacteraceae 2.1%
- everything else 45.8%
- Incertae Sedis 53.2%
- Candidatus Nitrososphaera 2.5%
- Sphingomonas 2.3%
- Pirellula 2.0%
- Paenibacillus 1.9%
- Peribacillus 1.8%
- Nocardioides 1.8%
- everything else 34.4%
- uncultured bacterium 53.2%
- uncultured archaeon 12.7%
- uncultured crenarchaeote 4.0%
- uncultured Acidobacteria bacterium 3.5%
- Bacillus huizhouensis 1.8%
- uncultured soil bacterium 1.8%
- metagenome 1.4%
- everything else 21.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 95% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 94% similar (genus)
- same collection date
- shared: 0.1 m, 2021
- composition 92% similar (genus)
- same collection date
- shared: 0.1 m, 2021
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA1031540-20260926/.